Package: GenoTriplo 1.1.0

GenoTriplo: Genotyping Triploids (or Diploids) from Luminescence Data

Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids. Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().

Authors:Julien Roche [aut, cre], Florence Phocas [aut], Mathieu Besson [aut], Pierre Patrice [aut], Marc Vandeputte [aut], François Allal [aut], Pierrick Haffray [aut]

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GenoTriplo.pdf |GenoTriplo.html✨
GenoTriplo/json (API)

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5 exports 0.49 score 81 dependencies 410 downloads

Last updated 2 months agofrom:ae5aab3144. Checks:OK: 7. Indexed: yes.

Exports:ClusteringCreate_Datasetlaunch_GenoShinyRun_ClusteringRun_Genotyping

Dependencies:base64encbslibcachemclicodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkdigestdoParalleldplyrDTevaluatefansifarverfastmapfontawesomeforeachfsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigprocessxpromisespspurrrR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownRmixmodsassscalesshinyshinyBSshinythemessourcetoolsstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml