Package: GenoTriplo 1.1.0
GenoTriplo: Genotyping Triploids (or Diploids) from Luminescence Data
Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids. Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().
Authors:
GenoTriplo_1.1.0.tar.gz
GenoTriplo_1.1.0.zip(r-4.5)GenoTriplo_1.1.0.zip(r-4.4)GenoTriplo_1.1.0.zip(r-4.3)
GenoTriplo_1.1.0.tgz(r-4.4-any)GenoTriplo_1.1.0.tgz(r-4.3-any)
GenoTriplo_1.1.0.tar.gz(r-4.5-noble)GenoTriplo_1.1.0.tar.gz(r-4.4-noble)
GenoTriplo_1.1.0.tgz(r-4.4-emscripten)GenoTriplo_1.1.0.tgz(r-4.3-emscripten)
GenoTriplo.pdf |GenoTriplo.html✨
GenoTriplo/json (API)
| # Install 'GenoTriplo' in R: |
| install.packages('GenoTriplo', repos = c('https://julienrochemode.r-universe.dev', 'https://cloud.r-project.org')) |
- GenoTriplo_to_clust - Example of dataset for clustering
- GenoTriplo_to_geno - Example of dataset for genotyping
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 months agofrom:ae5aab3144. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | OK | Oct 30 2024 |
| R-4.5-linux | OK | Oct 30 2024 |
| R-4.4-win | OK | Oct 30 2024 |
| R-4.4-mac | OK | Oct 30 2024 |
| R-4.3-win | OK | Oct 30 2024 |
| R-4.3-mac | OK | Oct 30 2024 |
Exports:ClusteringCreate_Datasetlaunch_GenoShinyRun_ClusteringRun_Genotyping
Dependencies:base64encbslibcachemclicodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkdigestdoParalleldplyrDTevaluatefansifarverfastmapfontawesomeforeachfsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigprocessxpromisespspurrrR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownRmixmodsassscalesshinyshinyBSshinythemessourcetoolsstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Clustering function | Clustering |
| Create dataset in appropriate format | Create_Dataset |
| Example of dataset for clustering | GenoTriplo_to_clust |
| Example of dataset for genotyping | GenoTriplo_to_geno |
| Shiny App for genotyping | launch_GenoShiny |
| Launch parallel clustering | Run_Clustering |
| Launch genotyping phase in parallel | Run_Genotyping |
